BB
In [5]:
Copied!
!pip install evince bubblebox braketlab
!pip install evince bubblebox braketlab
Requirement already satisfied: evince in /srv/conda/envs/notebook/lib/python3.9/site-packages (0.13) Requirement already satisfied: bubblebox in /srv/conda/envs/notebook/lib/python3.9/site-packages (0.1.9) Requirement already satisfied: braketlab in /srv/conda/envs/notebook/lib/python3.9/site-packages (0.97) Requirement already satisfied: pythreejs in /srv/conda/envs/notebook/lib/python3.9/site-packages (from evince) (2.3.0) Requirement already satisfied: sympy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from braketlab) (1.8) Requirement already satisfied: py3Dmol in /srv/conda/envs/notebook/lib/python3.9/site-packages (from braketlab) (1.8.0) Requirement already satisfied: numba in /srv/conda/envs/notebook/lib/python3.9/site-packages (from braketlab) (0.53.1) Requirement already satisfied: setuptools in /srv/conda/envs/notebook/lib/python3.9/site-packages (from numba->braketlab) (57.4.0) Requirement already satisfied: numpy>=1.15 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from numba->braketlab) (1.21.2) Requirement already satisfied: llvmlite<0.37,>=0.36.0rc1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from numba->braketlab) (0.36.0) Requirement already satisfied: ipydatawidgets>=1.1.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pythreejs->evince) (4.3.1.post1) Requirement already satisfied: ipywidgets>=7.2.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pythreejs->evince) (7.6.3) Requirement already satisfied: six in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipydatawidgets>=1.1.1->pythreejs->evince) (1.16.0) Requirement already satisfied: traittypes>=0.2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipydatawidgets>=1.1.1->pythreejs->evince) (0.2.1) Requirement already satisfied: ipython>=4.0.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipywidgets>=7.2.1->pythreejs->evince) (7.26.0) Requirement already satisfied: nbformat>=4.2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipywidgets>=7.2.1->pythreejs->evince) (5.1.3) Requirement already satisfied: widgetsnbextension~=3.5.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipywidgets>=7.2.1->pythreejs->evince) (3.5.1) Requirement already satisfied: jupyterlab-widgets>=1.0.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipywidgets>=7.2.1->pythreejs->evince) (1.0.0) Requirement already satisfied: ipykernel>=4.5.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipywidgets>=7.2.1->pythreejs->evince) (6.2.0) Requirement already satisfied: traitlets>=4.3.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipywidgets>=7.2.1->pythreejs->evince) (5.0.5) Requirement already satisfied: tornado<7.0,>=4.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets>=7.2.1->pythreejs->evince) (6.1) Requirement already satisfied: jupyter-client<8.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets>=7.2.1->pythreejs->evince) (6.1.12) Requirement already satisfied: matplotlib-inline<0.2.0,>=0.1.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets>=7.2.1->pythreejs->evince) (0.1.2) Requirement already satisfied: debugpy<2.0,>=1.0.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets>=7.2.1->pythreejs->evince) (1.4.1) Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (3.0.19) Requirement already satisfied: jedi>=0.16 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (0.18.0) Requirement already satisfied: backcall in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (0.2.0) Requirement already satisfied: pickleshare in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (0.7.5) Requirement already satisfied: decorator in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (5.0.9) Requirement already satisfied: pexpect>4.3 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (4.8.0) Requirement already satisfied: pygments in /srv/conda/envs/notebook/lib/python3.9/site-packages (from ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (2.10.0) Requirement already satisfied: parso<0.9.0,>=0.8.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from jedi>=0.16->ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (0.8.2) Requirement already satisfied: python-dateutil>=2.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from jupyter-client<8.0->ipykernel>=4.5.1->ipywidgets>=7.2.1->pythreejs->evince) (2.8.2) Requirement already satisfied: pyzmq>=13 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from jupyter-client<8.0->ipykernel>=4.5.1->ipywidgets>=7.2.1->pythreejs->evince) (22.2.1) Requirement already satisfied: jupyter-core>=4.6.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from jupyter-client<8.0->ipykernel>=4.5.1->ipywidgets>=7.2.1->pythreejs->evince) (4.7.1) Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbformat>=4.2.0->ipywidgets>=7.2.1->pythreejs->evince) (3.2.0) Requirement already satisfied: ipython-genutils in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbformat>=4.2.0->ipywidgets>=7.2.1->pythreejs->evince) (0.2.0) Requirement already satisfied: attrs>=17.4.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets>=7.2.1->pythreejs->evince) (21.2.0) Requirement already satisfied: pyrsistent>=0.14.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets>=7.2.1->pythreejs->evince) (0.17.3) Requirement already satisfied: ptyprocess>=0.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pexpect>4.3->ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (0.7.0) Requirement already satisfied: wcwidth in /srv/conda/envs/notebook/lib/python3.9/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython>=4.0.0->ipywidgets>=7.2.1->pythreejs->evince) (0.2.5) Requirement already satisfied: notebook>=4.4.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (6.4.3) Requirement already satisfied: Send2Trash>=1.5.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (1.8.0) Requirement already satisfied: jinja2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (3.0.1) Requirement already satisfied: nbconvert in /srv/conda/envs/notebook/lib/python3.9/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (6.1.0) Requirement already satisfied: terminado>=0.8.3 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.11.1) Requirement already satisfied: prometheus-client in /srv/conda/envs/notebook/lib/python3.9/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.11.0) Requirement already satisfied: argon2-cffi in /srv/conda/envs/notebook/lib/python3.9/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (20.1.0) Requirement already satisfied: cffi>=1.0.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (1.14.6) Requirement already satisfied: pycparser in /srv/conda/envs/notebook/lib/python3.9/site-packages (from cffi>=1.0.0->argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (2.20) Requirement already satisfied: MarkupSafe>=2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from jinja2->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (2.0.1) Requirement already satisfied: pandocfilters>=1.4.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (1.4.2) Requirement already satisfied: jupyterlab-pygments in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.1.2) Requirement already satisfied: mistune<2,>=0.8.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.8.4) Requirement already satisfied: entrypoints>=0.2.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.3) Requirement already satisfied: bleach in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (4.0.0) Requirement already satisfied: defusedxml in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.7.1) Requirement already satisfied: nbclient<0.6.0,>=0.5.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.5.4) Requirement already satisfied: testpath in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.5.0) Requirement already satisfied: nest-asyncio in /srv/conda/envs/notebook/lib/python3.9/site-packages (from nbclient<0.6.0,>=0.5.0->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (1.5.1) Requirement already satisfied: packaging in /srv/conda/envs/notebook/lib/python3.9/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (21.0) Requirement already satisfied: webencodings in /srv/conda/envs/notebook/lib/python3.9/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (0.5.1) Requirement already satisfied: pyparsing>=2.0.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from packaging->bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.2.1->pythreejs->evince) (2.4.7) Requirement already satisfied: mpmath>=0.19 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from sympy->braketlab) (1.2.1)
In [6]:
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import bubblebox as bb
import braketlab as bl
import evince as ev
import bubblebox as bb
import braketlab as bl
import evince as ev
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import matplotlib.pyplot as plt
import numpy as np
%matplotlib notebook
ev.enable_notebook() #must be last line
import matplotlib.pyplot as plt
import numpy as np
%matplotlib notebook
ev.enable_notebook() #must be last line
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box_1 = bb.mdbox(n100, 10, (10,10))
box_1 = bb.mdbox(n100, 10, (10,10))
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) /tmp/ipykernel_638/3031013055.py in <module> ----> 1 box_1 = bb.mdbox(100, 10, (10,10)) /srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py in __init__(self, n_bubbles, masses, vel, size, grid, pair_list, fields) 660 else: 661 self.masses = masses --> 662 self.n_bubbles = len(masses) 663 self.set_interactions(self.masses) 664 self.masses_inv = np.array(self.masses, dtype = float)**-1 TypeError: object of type 'int' has no len()
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f2a8baa3910>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/
In [13]:
Copied!
box_1.run()
box_1.run()
In [ ]:
Copied!
help(box_1)
help(box_1)
In [18]:
Copied!
while True:
box_1.advance()
box_1.update_view()
while True:
box_1.advance()
box_1.update_view()
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
--------------------------------------------------------------------------- ZeroDivisionError Traceback (most recent call last) /tmp/ipykernel_583/306884311.py in <module> 1 while True: ----> 2 box_1.advance() 3 box_1.update_view() /srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py in advance_vverlet(self) 763 """ 764 if self.first_iteration: --> 765 self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list) 766 self.first_iteration = False 767 if self.pair_list is not None: ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
IOPub data rate exceeded.
The notebook server will temporarily stop sending output
to the client in order to avoid crashing it.
To change this limit, set the config variable
`--NotebookApp.iopub_data_rate_limit`.
Current values:
NotebookApp.iopub_data_rate_limit=1000000.0 (bytes/sec)
NotebookApp.rate_limit_window=3.0 (secs)
imation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/anIOPub data rate exceeded.
The notebook server will temporarily stop sending output
to the client in order to avoid crashing it.
To change this limit, set the config variable
`--NotebookApp.iopub_data_rate_limit`.
Current values:
NotebookApp.iopub_data_rate_limit=1000000.0 (bytes/sec)
NotebookApp.rate_limit_window=3.0 (secs)
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
IOPub data rate exceeded.
The notebook server will temporarily stop sending output
to the client in order to avoid crashing it.
To change this limit, set the config variable
`--NotebookApp.iopub_data_rate_limit`.
Current values:
NotebookApp.iopub_data_rate_limit=1000000.0 (bytes/sec)
NotebookApp.rate_limit_window=3.0 (secs)
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 1028, in update
self.system.advance()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/bubblebox/mdbox.py", line 765, in advance_vverlet
self.Fn = self.forces(self.pos, self.size2, self.interactions, r2_cut = self.r2_cut, force = self.force, pair_list = self.pair_list)
ZeroDivisionError: division by zero
ERROR:tornado.application:Exception in callback <bound method TimerBase._on_timer of <matplotlib.backends.backend_webagg_core.TimerTornado object at 0x7f60454546d0>>
Traceback (most recent call last):
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/tornado/ioloop.py", line 905, in _run
return self.callback()
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 1216, in _on_timer
ret = func(*args, **kwargs)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1477, in _step
still_going = super()._step(*args)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1189, in _step
self._draw_next_frame(framedata, self._blit)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1208, in _draw_next_frame
self._draw_frame(framedata)
File "/srv/conda/envs/notebook/lib/python3.9/site-packages/matplotlib/animation.py", line 1776, in _draw_frame
self._drawn_artists = self._func(framedata, *self._args)
File "